chr8:74007677:T>C Detail (hg38) (LY96)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr8:74,919,912-74,919,912 View the variant detail on this assembly version. |
| hg38 | chr8:74,007,677-74,007,677 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_015364.4:c.203-2324T>C | |
| NM_001195797.1:c.113-2324T>C | ||
| Ensemble | ENST00000284818.7:c.203-2324T>C |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.129 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We observed two interactions between SNPs in CD14 and LY96 with environmental endotoxin exposure in ... | DisGeNET | Detail |
| We observed two interactions between SNPs in CD14 and LY96 with environmental endotoxin exposure in ... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs17226566 dbSNP
- Genome
- hg38
- Position
- chr8:74,007,677-74,007,677
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs17226566
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1289
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2161
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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